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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7494185
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLFFSLFL CYNLIVYIYC VSKNAYNIKE KRRGECNFPI NNQRCNNNMN SLIMNKYLYK  60
   61 KRKHSNTLPF IKTYNNFKEK NKNDVVQISY YSINHNKKYN NKIHTHILFM NNNNNNNNNS 120
  121 NSNKEYIKAN NANMLFSIYN KISEDGKTKN SLLSDISKLF KIVKESKLIF VTGFLLTTLS 180
  181 AIVDSYIPIF LSKTVSFVME RKKFTFLKIH KTNLSVVKNL IEYLKFYSTN PFHMYVLISV 240
  241 ISLLFSSFRS YIFNVCAYVS TNKLQKYLFN VLLHKNINYF KKKGKGELIS RLNIDSSELI 300
  301 DIFTTNIIVL FRNMIKMALS FYFLYKINVH LFIVSLFIVF IISNISIFFS NIFRKLAKEE 360
  361 SNVVAQSNNI VEESIYNFSL ISTFNTHNKE IKKYNNSLDT IYMSRMKLGL LYIIEKFFIR 420
  421 LIDMMTFILT LILSKKTLMY NLNTDTRTII SSVIYMQNII AQSCIIEQQY SRVQELIGNA 480
  481 EEVIKLIEKD NMRNNNNNNN NDNIKLVSNK YNFFSILFNI NDMKNFIFNH SLLKKFQTIQ 540
  541 NNSDYVFNII KPNYLKLFER NYNNLIKLFF NEKNFNQCDE SLFKNGSIDD INNIDMYEKK 600
  601 EETNKINDYH NFISNKQMYD NKTKDCTLKK KKQDNSFYYN TPNNNVEMKN QLDQHSFSKS 660
  661 ENFQNKLKKK IQEINMQEVY QFIKNDHALI IKYKLDRKFI RFLKTNYKKN IILLILKLYK 720
  721 ERNNSVSDNF LFLFDNISSF KNLSIKDKKS ILKMSNITNK TIYIILLTFL FYNYSKFYYK 780
  781 KQKKKNFINF IEKKNKMLKN NQNVERGQHG SSTYEKMYES MDDEININDV LSDAISDTIC 840
  841 DNSNDTIRDN SNDTICDNSN NTICDNSNDT ICDNSNVISS NYQSNQHLYP QIMSTTPNKN 900
  901 DQYNNPTDNL ELNNESVILN KTKSRTKKKR NLYNILPYIV ENAIKELEIL KFIDANYKSI 960
  961 NENLILDNIK DNQKGSTLIF ENVDFYFAKY PKNKILSNIN LNFSNKYTYG ILCYNDSGKN1020
 1021 YLAKLAARLY NKTYGNILLD DENIENISKY ILTKKISLVE EQSYIFSDSI IYNMLYSYNC1080
 1081 ITKGNKNFYY LNYNFKLNKN NINNCVHLFS HDNDITTNDY NNNNINKNIN SDNYSSSSSS1140
 1141 NTISSCRNYE QYEKIKEKNK KPKIKYKIKE NKPSIYNIHN TTNNNTVDQS LYTFKNFKKK1200
 1201 CLMCGSLIDT KLLEEQKKSP NYNKYKVHFI KKLYKEIIKV SKIVCLYDVI NSYPDKFFHN1260
 1261 INDKILSGGQ KQKISLARAI IKKPKILILD DAFSALDAAN ELKIFSSLKN YLPNCTIVNL1320
 1321 SHKITTVNKC DYIYVLKDGK IIEHGLRTKL IQNRNSEYIK KFNEY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle