YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23613378, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHYSKILL FSLPLNILVT SSYAHNKNKP SITPHHTPIT TSRVLSECDL YMPKYDNDAD  60
   61 MKSVKGTFDR QASQRFEEYE ERIKDKRQKR KEERDKNIQE IIEKDRKDKS FAEKVEKGCL 120
  121 RCGCGLGGVA ASIGLFGGLG IYAWRSAALV TAIQKGIEAS VEAGEAAGTK AGKEFVIAAL 180
  181 QKMGIFTVGD QRLVSYFSTT DYTSALKISS DIIQKYDPSS CFFDFSGARE TFCTWVKVKS 240
  241 DAAVNVERST VSTNALVEKA VGTIVTDAKT VVERAVETAT DEAIQRSIGV VDAKYAICQT 300
  301 AIIASVVAIL VIVLVMMIIY LILRYRRKKK MKKKDQYTKL LNE

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	300	0.98
Transmembrane Helix	301	323	0.95
Cytoplasmic	324	343	0.97