YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23613363, gi|...
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTQSSGGGA AGSSGEEDAK HVLDEFGQQV YNEKVEKYAN SKIYKEALKG DLSQASILSE  60
   61 LAGTYKPCAL EYEYYKHTNG GGKGKRYPCT ELGEKVEPRF SDTLGGQCTN KKIEGNKYIK 120
  121 GKDVGACAPY RRLHLCSHNL ESIQTNNYNS GNAKHNLLVD VCMAAKYEGD SIKNYYPKYQ 180
  181 RTYPDTNSQL CTVLARSFAD IGDIVRGKDL YLGNPQESTQ RIILENNLKD IFAKIHSDVM 240
  241 STSGSNGRAL QKRYKDTDNY YELREDWWAL NRDQVWKAIT CNAGGGNRYF RQTCGSGEWA 300
  301 KDKCRCKDDK VPTYFDYVPQ YLRWFEEWAE DFCRLRKHKL KDAKNKCRGD SGNDRYCDLN 360
  361 RYDCTQTIRG NEHFVEKDDC KGCQYSCAHF VNWIDNQKLE FEKQKEKYTK EIKKKHPTTI 420
  421 IIKTANRKTT INNLYVKEFY KKLQEKYGDV ENFLQKLNEE QICKNQPYND ESSIDINFKS 480
  481 IKDIDIFSHT EYCQACPWCG AKRKGKGWEP KEKTCGKTKT YDPKKTTNIP ILTPYISQQS 540
  541 ILKKYNKFCN GNGGNGAPAT ATGGGQIKNW QCHYEGDNND NCVEGEWKEF KEGKNVMSYN 600
  601 AFFWKWVHDM LIDSMQWRNE HGNCINKDND NTCKNSCKRP CECFKRWVDQ KKKNEWEAIK 660
  661 DHFKKQNIAA ETQCDPGVTL QWVLILDFLK DESTEDKENK VSAEEAKEIK HLRQMLQQAG 720
  721 VDDPAAFARP CTEDGVAEQD TIMDKLLNRE ENDATECKKC DKPPPAPTAG DRGPGARADP 780
  781 HDVQQPRPPG SGPGTDANDE DDDDDDDDDD EEDGEAKEEE EDEEKQEDVH QEEKAKKEEP 840
  841 QKEEVARTPK DDVNVCNIVN NVFTDGSSLQ AACSLKYGKN APTSWKCVTP SGNTSDTTVK 900
  901 SGDTTGGSIC VPPRRRRLYV TPLTRLTGGD STTQASQASE VQTQARGSNT DKSPGSSEAA 960
  961 QGDGVSKDPQ KALLKAFVES AAVETFFLWD RYKKIKEKEK KEKKKTYEQI YESTDYDDEE1020
 1021 KDPQEELKKG IIPDEFKRQM FYTLGDYKDI LYSGDTVNGG NEDKIKKAIN NYFQKIREQS1080
 1081 SSDNNPSPRS VKTPSTSDKD PQTWWNAHAP SIWNAMVCAL TYDTNSGGEG KTTTITQDPN1140
 1141 LKTALWDENG KKPLKTKYQY DSVTIGASGA KPQTKAKPTG GDTPLTQFVL RPTYFRYLEE1200
 1201 WGQNFCKKRT EMLEKIKYEC KVGQGRGGRK QKTPQCSCYG ENCDDQLDDN PSTDADLKCP1260
 1261 GCGRECRKYK KWIEKKKEEF TKQSNVYEEQ KTKCQKESKS AKGNNHGNEF CGTQGTCDTA1320
 1321 GDFLNRLKSG PCKKENGKDN QEDEINFKDE DKTFGHENYC APCPVFKDIC KKKDCRNASN1380
 1381 NMCNGKDFIT AEDIKIMDSS SEEVNMLVSD NDTNKFDGGL DACKDAHIFK GIKENKWSCG1440
 1441 NVCGYNVCKP KKVNGEKGSG ENNDQIITIR GLVTHWVQNF LDDYNKIRTK LKPCRNNGEV1500
 1501 SKCIKDCVKK WVEKKTEEWP KIRDRYLEPY KSDDGYNKKS LVRSFMETLI PLMDLTNGKE1560
 1561 KIQELNKFLR SYECNCADNS QQKGDTPKDI VECLLEKLED KANKCKTQTS GTDCHPSTPL1620
 1621 EDDDEPLEET EENTVEQPNI CPTKQPQPEK EDGCEAAPTT AEETSPTATS EGTENQSPPP1680
 1681 PPPAPAPAPA PAPEKSQPKE DKKVEPQPKP QPTNPPPNLF NNPAVIPALM SSTIMWSIGI1740
 1741 GFAAFTYFLL KKKTKSSVGN LFQILQIPQN DYGIPTLKSK NRYIPYRSGT YKGKTYIYME1800
 1801 GDSSGDEKYA FMSDTTDVTS SESEYEELDI NDIYVPHAPK YKTLIEVVLE PSGNNTTASG1860
 1861 KNTPSDTQND IPTSDTPPPI TDNEWNTLKD EFISQYLQSE QPKDVPNDYK SGDIPLNTQP1920
 1921 NTLYFNKPEE KPFITSIHDR DLYTGEQISY NIHMSTNTMD DPKYVSNNVY SGIDLINDAL1980
 1981 NGDYDIYDEI LKRKENELFG TNHVKQTSIH SVAKLTNSDP IHNQLELFHK WLDRHRNMCE2040
 2041 KWKNDNERLA KLKEEWENET HSGNTHPSDS NKTLNTDVSI QIDMDHEKRM KEFTNMDTIL2100
 2101 DDLKTYNEPY YDVQDDIYYD VNDHDASTVD SNNMDVPSRV QIEMDVNTKL VKEKYPIADV2160
 2161 WDI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle