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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71676531, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKSLSLNL GRIFSKLSLK TILIVPYVIQ ILGAFGALGY IAFLNGQQTV DDLGKKLTNK  60
   61 ISDRIQQHVL GYLNQSHQVL RITNDAIESA NLDIYNFVAL RRYFWEVVKE KDLQDYLFFG 120
  121 NEEGEFIGVE HFAEGEIYLK SCKIPTQSLC ETYLLNNQGN ISQYLNSKEY DPRDTPWYLV 180
  181 AKKLGEPTWS PILSSFSGQN SSLDIFAVQP IFDSTENLLG VLSNKTTLVK LTNFLKNLYI 240
  241 SPNGQSFIIE RSGNLIASSE VMEPFVIKGT QENRKIERLP ATASENKIVS MTTKHLQQKF 300
  301 SSFAEITHTH EMNFPIEEEW YYASVIPVID GRGINWLAVV VIPEDDFMEK VNMNIRTTIL 360
  361 LSFAALTITV LLGIVTTNWI TKPILQLNSA AKEISQGKWE TQLKIYREDE LGELANSFDQ 420
  421 MASQLKKSFE TLEAQNKQLT ELDRLKDEFL ANTSHELRTP LNGIIGIGEF LLEENTKNLN 480
  481 SITTSNLAII VSSARRLSNL VNDILDFSKI RYHKLELQVR AIDVRIVVES VITLNRVLVG 540
  541 KNKNLQLTNA IPTDLPPVLA DENRLQQILY NLIANAIKFT ESGKVEISAS LYSPKEDQDE 600
  601 ATEIIIMVSD TGIGIPPDQL DRIFESFEQG EGSIIRKYGG TGLGLAVTKE LVELQGGRIW 660
  661 VESEVGVGSR FNVTLPISNQ LVPNSSLNFP SPTVNNIHYL IKNIETTIRS KPLGSKIPNG 720
  721 DFHVLVVDDE PINIQVLNNY LKANNYQVTQ ALSGKEALAA LENNHNFDLI LLDVMMPNMS 780
  781 GYEVCSQIRE KYPAQSLPVL MLTAKNQIAD LVMGFQFGAN DYLTKPFAKD ELLTRIQTHI 840
  841 KLSKITKAYE RFVPHEYVEL LSKESIINVK LGDRVSTKMA IFFSDIRSFT TISEQMTSQE 900
  901 TFAFVNGYLK EVCPEIRDRN GLIIKFLGDG IMAVFPDGAD DALEAAIAQL KRLQEYNQVL 960
  961 LSTGWMPIKI GIGIHWGHIM VGIVGEKGRM SGDAFSNNVN LTSRLEGLTK FYGVSLLISE1020
 1021 SAFNYLKNPQ KYQIRFLDRA SVKGIDEPIN VYEVLDGEVD EIRELKLQTQ VDFALGLESY1080
 1081 RVGELVDAKD YFEKVLAVNY SDKTAQLYLE RIDDLMVTGV PKNWNGVWAF TQK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle