YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71675158, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKNKYSPP SITTISRQEL RELVRSQLQT LLEQDNLSGA KALLVPVQPA DIAEAIEGLP  60
   61 ETMQVIAFRL LPKVEAIEVY EQLGSTVQQS LCEKFKRQEV IDIVDKMSPD DRVKLFEELP 120
  121 AAVVRRLLGQ LSPTERQATA QLLGYDSGTA GRIMTPEYIS LKEEYTVAES LERIRSLANV 180
  181 TETVYSLYVT DTNRYLTGIL SLRDLVTSQL NQTIGEIMSR DFVSVQTGTD QEEVVRVIQR 240
  241 YDFLAIPVVD SEQRLVGIIT VDDVLDILEQ ETTEDIYALG GVQSDGDNYF QVNLFTVARR 300
  301 RVVWLFVLLL TNSVTGGIIT AQEDILKKVV TLAAFIPLLT GTGGNVGAQS STVVIRGMNT 360
  361 DEIWKIGILK VIIREACAGA MLGSILGLLA TAWAYLFIVN GNLEVSVTVG ISLVAISTLA 420
  421 SIAGSALPFL FRSFGLDPAL MSAPFITTAV DVLGVLIYFN LARMILQI

Type	Start	End	Confidence
Cytoplasmic	1	301	0.75
Transmembrane Helix	302	321	0.91
Non-Cytoplasmic	322	329	0.64
Transmembrane Helix	330	355	0.76
Cytoplasmic	356	375	0.67
Transmembrane Helix	376	397	0.92
Non-Cytoplasmic	398	406	0.65
Transmembrane Helix	407	431	0.87
Cytoplasmic	432	439	0.64
Transmembrane Helix	440	462	0.87
Non-Cytoplasmic	463	468	0.63