YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116103681, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	288	0.89
Transmembrane Helix	289	310	0.81
Non-Cytoplasmic	311	331	0.78
Transmembrane Helix	332	353	0.92
Cytoplasmic	354	362	0.68
Transmembrane Helix	363	382	0.88
Non-Cytoplasmic	383	396	0.76
Transmembrane Helix	397	414	0.94
Cytoplasmic	415	426	0.76
Transmembrane Helix	427	449	0.89
Non-Cytoplasmic	450	468	0.59
Transmembrane Helix	469	495	0.78
Cytoplasmic	496	509	0.58
Transmembrane Helix	510	531	0.81
Non-Cytoplasmic	532	540	0.57
Transmembrane Helix	541	561	0.68
Cytoplasmic	562	568	0.80
Transmembrane Helix	569	591	0.87
Non-Cytoplasmic	592	614	0.83
Transmembrane Helix	615	638	0.93
Cytoplasmic	639	657	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTNDNLIV VAPASGKVIP LEQVEDQVFA QKMMGEGFGL EPTNGNLVAP VAGTVMMVAD  60
   61 SKHAIGIKTD SGVEILLHLG IDTVELKGTP YDLKVQVGDH VEAGSSLGTW DLDLVRNNGK 120
  121 QTTIIFAITN SSEVLEQLEI EADTVEVGKN VANLKLKTVS EKVERSKSNE GNRFEKTAQK 180
  181 VIDAVGGPDN INSVIHCISR LRFYLKDINK PDDDIIRNDD HVIDIMRAQG QYQVVIGPDV 240
  241 VDVYDAVIDQ LGTEFGDEEG TEQAVKATQP QGPDNRNFLE KTKDGFNNFI GVITGSMSPV 300
  301 IWSLAAAGIL KGLLSVLTMP QIGELLSPKS NLYIILNAIG DSVFFFLPIL VGFSAAKRIG 360
  361 GDPIIAAVIG GVLVHPTLTP LAGKSLGMLG GFNFPMVQYS YSIFPMILAA WLAFKIENYL 420
  421 KKHLPSYLTM IFVPFITILI VSGITIYITG PVIVGISKWI AVMISWVLVH SGWASGILVG 480
  481 GFHQVLVIFG LHWGITPLVV NDIATTGHSY LNALICQTMI SQGAAVLAVA IKTKKTNLKS 540
  541 LSFAAAISAF CGVTEPAIYG VNLRYRRVFI SGLIGSAFGG FITGLFHGNM YGFAGSWIGF 600
  601 ASFFNPSNPS DLSSFWIFLI SSVVSTIIAF IAAYVWGYND KMEVGKKVEK PINPSKK