YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48870654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKYTIIAAT GCPTGIAHTY MAQEALEEAA KKRGVSIKVE THGQSGTENQ FTPEEISNAK  60
   61 GVIIAADKDV DIERFDGKRL INVSVTKGMK EPDELVSKIL DDDVPIYHSN GQYNKEDQIS 120
  121 TTNGTFWHSI YVDLMNGVSH MLPLVVAGGV LTAISFFWGI NSADPNSAQF NSFAQLLNTI 180
  181 GGFAMNLMVP VLCAYIAEAI GKRSGLVVGF ATGMIAYTNG TGFLGGIVGG FLAGYTVVLL 240
  241 QHLFKKLPKS LDGLKQIFLF PVIGVFISGA IMWYMSVPMK DINTGMMAFL KGMENSSPLV 300
  301 LGLIIGIMCA SDMGGPINKA AYLTGTALLA QGNYFFMAGV SAACIAPPLA TGFSVLFNRK 360
  361 AYSENERSAG YVNFLLGSTH ITEGAIPFAA KNPLINIPIF MVGSSIAAIL TYTTRISVPA 420
  421 PHGGFIVLPL VNKPFLWVLF IVIGAIVSGL LLSLADGHKA HVGEKTLEDK REVSNERKVN 480
  481 DESLDSILTV DNIKVNVDVE SRDELLRYLS NLSVSNGYSS DANAVYNKYL ARESAGSTGM 540
  541 EKGIAIPHAQ DNTINTSAML VLKLKQPIEW KTFDNQPVDT VISFLIPERD QGNHLRYLSS 600
  601 VSKLLMHESF VQELKNAKSV EEIAALFKK

Type	Start	End	Confidence
Cytoplasmic	1	137	0.97
Transmembrane Helix	138	160	0.89
Non-Cytoplasmic	161	175	0.88
Transmembrane Helix	176	197	0.90
Cytoplasmic	198	212	0.69
Transmembrane Helix	213	237	0.82
Non-Cytoplasmic	238	256	0.85
Transmembrane Helix	257	277	0.95
Cytoplasmic	278	296	0.86
Transmembrane Helix	297	317	0.88
Non-Cytoplasmic	318	334	0.86
Transmembrane Helix	335	357	0.92
Cytoplasmic	358	393	0.80
Transmembrane Helix	394	416	0.86
Non-Cytoplasmic	417	434	0.74
Transmembrane Helix	435	455	0.94
Cytoplasmic	456	629	0.80