YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116102273, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	38	0.86
Non-Cytoplasmic	39	112	0.96
Transmembrane Helix	113	132	0.90
Cytoplasmic	133	143	0.75
Transmembrane Helix	144	164	0.91
Non-Cytoplasmic	165	170	0.67
Transmembrane Helix	171	188	0.94
Cytoplasmic	189	197	0.74
Transmembrane Helix	198	212	0.86
Non-Cytoplasmic	213	216	0.70
Transmembrane Helix	217	236	0.84
Cytoplasmic	237	241	0.79
Transmembrane Helix	242	262	0.72
Non-Cytoplasmic	263	395	0.60
Transmembrane Helix	396	418	0.89
Cytoplasmic	419	427	0.49
Transmembrane Helix	428	450	0.92
Non-Cytoplasmic	451	456	0.55
Transmembrane Helix	457	480	0.78
Cytoplasmic	481	495	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIKNSWRV FQKHISPAAV ATALAAIICA VILFIPPING YADNGDFYRA MLSNGIYRLP  60
   61 TKDNQYIGYV VTKFGILKYF NENNVAVFSS QALFVKAAVI LNKLLYSHRY FDIRLLGIVY 120
  121 YVAFLPGIYL LTKALTGTWR RIRSYVIAIL VVLIFADASF ILYFNSFFAE PGMLISFLYV 180
  181 VGSLILLARG DYSKRWKLLL TYFISVVVLI TSKQQNAPLA LSFGVMSVGL FFLPGLKKAK 240
  241 KLAVMGGVVA TLGAGVLTYS LINKEFNDVN QYQSFSHGVL METGDPSKNI AKSGLSEQFA 300
  301 LMREQNYYAK TFDTVDPSSH YVRKHLIEKY NFAWIIKYYA RNTDQFLRLL DVASKDIMVT 360
  361 QVKAVGDYTK DSGKKAGQQS TFFTLYSSLM EAFFPGKYAF LCLLAITFVA VYAVSAYIDF 420
  421 VAGRLFGVVR FFLVLGLMTI CVFVPIVSII GDGDADLAKH LFMVPLSLDF TFIMFISDIL 480
  481 NHQLWLTEQE EDGDA