YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33335915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPQGQSPPS WVLEESDAAT DDKDVAVPVP PSAEKRKLDI VWRNVILFLL LHTGAVYGGY  60
   61 LFFTKAMWAT KFFAIFLYLC SGLGITAGAH RLWAHKSYKA RLPLRILLTL FNTMAFQDSV 120
  121 LDWARDHRMH HKYSETDADP HNATRGFFFS HVGWLLVRKH PQIKAKGHTI DMSDLCSDPV 180
  181 LRFQKKYYLT LMPIFCFILP TYIPTLWGES LWNAYFVAAI FRYCYVLNVT WLVNSAAHKW 240
  241 GDRPYDKNIN PVETKPVSLV VFGEGFHNYH HVFPWDYKTA ELGGYSLNIT KLFIDTMAKI 300
  301 GWAYDLKSVS PDIVEKRVKR TGDGSHEVWG WDDKDVPPEQ KAAATIINPE KTE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.99
Transmembrane Helix	40	63	0.86
Non-Cytoplasmic	64	71	0.81
Transmembrane Helix	72	94	0.91
Cytoplasmic	95	186	0.93
Transmembrane Helix	187	206	0.93
Non-Cytoplasmic	207	213	0.76
Transmembrane Helix	214	233	0.89
Cytoplasmic	234	353	0.95