YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIT2B_XENLA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFRLSLVQ FLVSPVKSDN LNKACKLIKE AAQKGAQIVA LPECFNSPYG TKYFPEYAEK  60
   61 IPGESTELLS QVAKECGIYL IGGSIPEEDS GKFYNTCAVF GPDGTLLVKH RKIHLFDIDV 120
  121 PGKIRFQESE TLSPGDSFSV FDTPYCKVGV GICYDMRFAE LAQIYANKGC QLLVYPGAFN 180
  181 MTTGPAHWEL LQRARALDNQ VYVATASPAR DEKASYVAWG HSTVVSPWGE VIAKAGFEET 240
  241 VISADIDLQY LAEIREQIPI RRQRRDNLYT VEEKKN

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	276	0.99