YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITYTNEVA NARLGSFSCL LLRWRGSIYK LLYGEFLVFI FLYYCIRGLY RMVLSNHQQQ  60
   61 QFEKLALYCN SYIQFIPISF VLGFYVTLVV SRWWNQYENL PWPDRLMMQV SSFVEGKDEQ 120
  121 GRLLRRTLIR YAILGQVLIL RSISTSVYKR FPSLQHLMQA GFMTPGEYKQ LQRLGLPHNT 180
  181 FWVPWVWFAN LSMKAYLGGR IRDTVLLQSL MNEVCTLRTQ CGHLYAYDWI NIPLVYTQVV 240
  241 TVAVYSFFLA CLIGRQFLNP LKNYPGHEMD LVVPVFTILQ FLFYMGWLKV AEQLINPFGE 300
  301 DDDDFETNWI IDRNLQVSLL SVDGMHHDVP PLERDLYWNE AAPQPPYTAA SAGSHRQSFM 360
  361 GSTFNMSLKK KDSEEESDTY DKKENDYGST IGRFLGLQSN DYHPPKTDLK TKLLWSKKDP 420
  421 FLEDQSKNDK QKDQKNDVWK PKDLFRAIPK FKRPSYRQAP QPLGSHLPMV FPPQQSAPSV 480
  481 RYSDTGGGPS AQYQEACHMK KKTVEFNLNI PECPTEHEQP HLDQMHTILK EPGESYPVSD 540
  541 KADTNPVSYK

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	50	0.90
Non-Cytoplasmic	51	71	0.79
Transmembrane Helix	72	94	0.85
Cytoplasmic	95	130	0.83
Transmembrane Helix	131	148	0.54
Non-Cytoplasmic	149	233	0.61
Transmembrane Helix	234	254	0.87
Cytoplasmic	255	268	0.68
Transmembrane Helix	269	288	0.83
Non-Cytoplasmic	289	550	0.84