YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927551
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLSLPPNV SMGFRLVTLV ALLFTHVDHI TADTEAETGG NETTECTGSY YCKKGVILPI  60
   61 WEPQDPSFGD KIARATVYFV AMVYMFLGVS IIADRFMSSI EVITSQEKEI TIKKPNGETT 120
  121 KTTVRIWNET VSNLTLMALG SSAPEILLSV IEVCGHNFTA GDLGPSTIVG SAAFNMFIII 180
  181 ALCVYVVPDG ETRKIKHLRV FFVTAAWSIF AYTWLYIILS VSSPGVVEVW EGLLTFFFFP 240
  241 ICVVFAWVAD RRLLFYKYVY KRYRAGKQRG MIIEHEGDRP ASKTEIEMDG KVVNSHVDNF 300
  301 LDGALVLEVD ERDQDDEEAR REMARILKEL KQKHPDKEIE QLIELANYQV LSQQQKSRAF 360
  361 YRIQATRLMT GAGNILKRHA ADQARKAVSM HEVNMDVVEN DPVSKVFFEQ GTYQCLENCG 420
  421 TVALTIIRRG GAVELVVLWE GR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	30	0.68
Non-Cytoplasmic	31	74	0.78
Transmembrane Helix	75	93	0.90
Cytoplasmic	94	130	0.76
Transmembrane Helix	131	151	0.70
Non-Cytoplasmic	152	166	0.76
Transmembrane Helix	167	187	0.95
Cytoplasmic	188	197	0.88
Transmembrane Helix	198	218	0.93
Non-Cytoplasmic	219	231	0.75
Transmembrane Helix	232	249	0.93
Cytoplasmic	250	442	0.98