YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCRN2_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSPDAPC SCDCFVSVPP ASAIPAVIFA KNSDRPRDEV QEVVFIPAGT HTPGSRLQCT  60
   61 YIEVEQVWKT HAVILSRPSW LWGAEMGANE LGVCIGNEAV WTKEPVGEGE ALLGMDLLRL 120
  121 ALERSSTAQA AVHVIAGLLD RYGQGGSCRE DPEPFCYHNT FLLADRTEAW VLETAGRLWA 180
  181 AQRIQGGARN ISNQLSIGTD ISAEHPELRS HAKAQGWWSG QGVFDFAEVF SLTQQPVRME 240
  241 AAKARFRAGC EMLQRQQGSI TAEVMMDILR NKESGICMDS GGFRTTASMV SVLPQDPTKP 300
  301 CVHFLTATPD PSRSVFKPFI FEVGVSQPPQ VLSPTFGAQD PVRILPRFQT QVDRRHSLYR 360
  361 GHQAALGLMD EQEQAQLRQE QQSLEQEGLE ALRGLLTGEQ TPAPQELGSL FQAFVEREHQ 420
  421 VYA

Type	Start	End	Confidence
Signal Peptide	1	23	0.51
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	423	0.99