YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DNJB6_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDYYEVLGV QRHASPEDIK KAYRKQALKW HPDKNPENKE EAERKFKQVA EAYEVLSDAK  60
   61 KRDIYDKYGK EGLNGGGGGG GSHFDSPFEF GFTFRNPDDV FREFFGGRDP FSFDFFEDPF 120
  121 DDFFGNRRGP RGSRSRGAGS FFSAFSGFPS FGSGFPAFDT GFTPFGSLGH GGLTSFSSAS 180
  181 FGGSGMGNFK SISTSTKIVN GKKITTKRIV ENGQERVEVE EDGQLKSLTI NGVADENALA 240
  241 EECRRRGQPT PALAPGPAPA PARVPSQARP PTPAPTPAPA QTPAPSVSTR PQKPPRPAPT 300
  301 AKLVSKSNWE DEEQDRQRVP GNCDAPMTSA GLKEGGKRKK QKQKEDSKKK KSTKGNH

Type	Start	End	Confidence
Cytoplasmic	1	136	0.97
Transmembrane Helix	137	158	0.89
Non-Cytoplasmic	159	167	0.82
Transmembrane Helix	168	189	0.79
Cytoplasmic	190	357	0.90