YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927296
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	118	0.74
Transmembrane Helix	119	143	0.83
Non-Cytoplasmic	144	149	0.42
Transmembrane Helix	150	167	0.67
Cytoplasmic	168	178	0.85
Transmembrane Helix	179	201	0.93
Non-Cytoplasmic	202	208	0.80
Transmembrane Helix	209	229	0.96
Cytoplasmic	230	270	0.95
Transmembrane Helix	271	293	0.83
Non-Cytoplasmic	294	313	0.86
Transmembrane Helix	314	335	0.90
Cytoplasmic	336	346	0.77
Transmembrane Helix	347	366	0.90
Non-Cytoplasmic	367	371	0.77
Transmembrane Helix	372	396	0.83
Cytoplasmic	397	411	0.79
Transmembrane Helix	412	429	0.95
Non-Cytoplasmic	430	439	0.78
Transmembrane Helix	440	459	0.96
Cytoplasmic	460	475	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVVELSPT SEQCEFVLGL PVNKKTPPRK AQNSIISITM VAMVNNTDQP SHLNSSTEWF  60
   61 PDGLNGDQHE ASKHLSIKAP VYNWSPQTQG IIFSSVQYGM MLMQGPGGYL AGKLGTKKVV 120
  121 GIALLGSSLL TLCIPLAANL GLAFLLATRA VQGLTQGAGY GGQFALWQKW APPNERSRLC 180
  181 SIAMSGMILG IFAVLLVGGI ISEALGWPFV FYIFGSIGVV CCLLWLILVY DDPVSHPWIS 240
  241 SPEKEYILSS LDQQFNSEEQ PLPIKAMLKS LPLWSMCLCS MTHQWLVNTL IIYTPTYISS 300
  301 VFKVNIRDNG LLSSLPFFVA WVIGILGGLL ADFLLSKNFR LITVRKIITI LGNTPPAALV 360
  361 VALPYVQSSY IATTTFLTLS CGLSPLCQSG VYINALDIAP RYASLLMGTS RGLAHSSAVM 420
  421 VPIVAGFFLN QDSEFGWRNF FFVLFAINLF GLIIYLVFAK ADIQEWARER KLTRL