YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50926839
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APRAEPRRQT PAATSAAPTA APQPSRCHRA PKATMKKEVC SLAFFKAVFA EFLATLIFVF  60
   61 FGLGSALKWP SALPTILQIS IAFGLAIGTL AQALGPVSGG HINPAITLAL LIGNQISLLR 120
  121 AVFYVAAQLV GAIAGAGILY WLAPLNARGN LAVNALNNNT TPGKAMVVEL ILTFQLALCI 180
  181 FSSTDSRRTS PVGSPALSIG LSVTLGHLVG IYFTGCSMNP ARSFGPAVVM NRFSPSHWVF 240
  241 WVGPIVGAML AAILYFYLLF PSSLSLHDRV AVVKGTYEPE EDWEDHREER KKTIELTAH

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	64	0.90
Non-Cytoplasmic	65	75	0.75
Transmembrane Helix	76	100	0.78
Cytoplasmic	101	120	0.70
Transmembrane Helix	121	143	0.91
Non-Cytoplasmic	144	164	0.82
Transmembrane Helix	165	184	0.84
Cytoplasmic	185	193	0.75
Transmembrane Helix	194	216	0.87
Non-Cytoplasmic	217	236	0.83
Transmembrane Helix	237	259	0.93
Cytoplasmic	260	299	0.86