YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP11_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALLGLPPE VQDTCISLGL MLLVVLFMGL ARVIARQQLH RPMVHAFVLE FLATFQLCYC  60
   61 THELQLLSEQ DSGHPTWTLT LIYFFSLVHG LTLVGTASNP CGVMMQMILG GMSPEMGAVR 120
  121 LMAQLVSALC SRYCISALWS LSLTKYHFDE RILACRNPIN TDISKAIIIE AICSFIFHSA 180
  181 LLHFQEVRTK LRIHVLAALI TFLAYAGGSL TGALFNPALA LSLHFPCFDE SFYKFFVVYW 240
  241 VAPSLGVLLM ILMFSFFLPW LHNNQLSNKK E

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.83
Transmembrane Helix	14	35	0.91
Cytoplasmic	36	42	0.81
Transmembrane Helix	43	65	0.72
Non-Cytoplasmic	66	80	0.75
Transmembrane Helix	81	103	0.84
Cytoplasmic	104	120	0.68
Transmembrane Helix	121	141	0.81
Non-Cytoplasmic	142	165	0.75
Transmembrane Helix	166	184	0.83
Cytoplasmic	185	192	0.87
Transmembrane Helix	193	215	0.89
Non-Cytoplasmic	216	237	0.82
Transmembrane Helix	238	261	0.90
Cytoplasmic	262	271	0.92