YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90022183, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQKKEQKE ELALSVPDGL PVDEHIEEVS EGGKKVQRRG VYLLPNLFTT GALFGGFFAI  60
   61 ISAMKGNFDH AALAIFAAQI LDGFDGRVAR MTNTESRFGT EYDSLSDMVS FGLAPGIVAF 120
  121 SWGLEPLGKF GWAAAFVFVC CAALRLARFN TQSGKTDSNY FTGLASPPAA TLLASGVWCG 180
  181 SELELTTQVS VFAAILTAFV GLMMVSNFRY HSFKGLDANR RVPFVSMFIV VMVFILVTID 240
  241 PPKVLFAMAF IYATSGPIAW LIGFFKGAAT KVAAVDSADS NSSSEAEEKA K

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	63	0.93
Non-Cytoplasmic	64	69	0.81
Transmembrane Helix	70	89	0.71
Cytoplasmic	90	103	0.72
Transmembrane Helix	104	123	0.74
Non-Cytoplasmic	124	129	0.80
Transmembrane Helix	130	149	0.94
Cytoplasmic	150	159	0.87
Transmembrane Helix	160	179	0.95
Non-Cytoplasmic	180	188	0.75
Transmembrane Helix	189	210	0.90
Cytoplasmic	211	220	0.86
Transmembrane Helix	221	239	0.94
Non-Cytoplasmic	240	244	0.83
Transmembrane Helix	245	265	0.91
Cytoplasmic	266	291	0.94