YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49257606, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAHGGDSG PGLCGVSVFC CLTLACSYVG SLYVWKSELP RDHPAVIKKR FTSVLIVSLL  60
   61 SPLFLSLWKE MTGVKTDAPL LSLMGFRIEG MITAAILPLL LTMVLFLGPL VQLSLDCPWD 120
  121 FLDGLKVGFD PRFWMLCGTD MRWLRNQVIA PLTEELVFRA CMLPMLVPCT GPGPAIFTCP 180
  181 LFFGIAHFHH VIEQLRFRQA TVLSIFLSAV FQFSYTAVFG AYTAFIFMRT GHLIGPVLCH 240
  241 SFCNYIGFPA IFGALEHPQR FTIILFYFLG VVLFILLLYP MTEPTLYGDI PICKLLDVQS 300
  301 TEYRSLCS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.50
Transmembrane Helix	12	34	0.90
Non-Cytoplasmic	35	49	0.49
Transmembrane Helix	50	68	0.83
Cytoplasmic	69	89	0.57
Transmembrane Helix	90	111	0.89
Non-Cytoplasmic	112	169	0.64
Transmembrane Helix	170	191	0.79
Cytoplasmic	192	201	0.71
Transmembrane Helix	202	225	0.88
Non-Cytoplasmic	226	231	0.67
Transmembrane Helix	232	253	0.88
Cytoplasmic	254	260	0.70
Transmembrane Helix	261	282	0.89
Non-Cytoplasmic	283	308	0.81