YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67849842, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGIRGRVVG TYLIITFLSV VIFEIILIYG LVEFYYSSIE AELSRSAQSI IHNYSQYFNN  60
   61 YDLHRDAKVL LESMPGNTVA QVQIIDDKGV LIADSIEPSM EGKKLDNYDV NMALNGKEAA 120
  121 WKGKIPMTGE PVFSVSFPII RPDSEEVIGI VRVITTLSDV NEILKNHIII LISLGLCIVF 180
  181 LIFLTGLALT NTIIKPVKEI TSAAKAMAQG RFDVRVSKRY DDEIGELGDT LNYMAQEVAN 240
  241 QQKMKNDFIA SISHELRTPL TSIMGWIITI NSGDIDSKEE LKEGLDIIER ESKRLAELVD 300
  301 ELLDFSKFDA GIITLRKSVV NLGELLKYIK RQMEPRAERK GITMTIDVDE HLPLIEADEN 360
  361 RLKQVFINII DNSFKFTQKG GYIDIIGRKN ENGVLIRIED SGCGIPEEDL PRVKQRFFKG 420
  421 SNVVSGSGLG LAICDEIVRL HNGKIDIEST VGKGTRVDVI LPV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	167	0.88
Transmembrane Helix	168	189	0.89
Cytoplasmic	190	463	0.80