YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50926254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPEVVVSS CSSHQDESPC TFYPSSSQSE QLLLEDQMRR KLKFFFMNPC EKFWARGRKP  60
   61 WKLAIQILKI AMVTIQLVLF GLSNQMVVAF KEENTIAFKH LFLKGYMDRM DDTYAVYTQN 120
  121 DVYDQIIFAV TRYLQLRNIS VGNHAYENKG TKQSAMAVCQ HFYRQGTICP GNDTFDIDPE 180
  181 VETDCFLIEP EEAFHMGTPG ENKLNLTLDF HRLLTVELQF KLKAINLQTV RHQELPDCYD 240
  241 FTLTITFDNK AHSGRIKISL DNDISIRECK DWHVSGSIQK NTHYMMIFDA FVILTCLSSL 300
  301 VLCARSVIRG LQLQQEFVNF FLLHYKKEVS ASDQMEFING WYIMIIVSDI LTIVGSILKM 360
  361 EIQAKSLTSY DVCSILLGTS TMLVWLGVIR YLGFFAKYNL LILTLQAALP NVIRFCCCAA 420
  421 MIYLGYCFCG WIVLGPYHEK FRSLNKVSEC LFSLINGDDM FSTFAKMQQK SYLVWLFSRV 480
  481 YLYSFISLFI YMILSLFIAL ITDTYETIKH YQQDGFPETE LRKFIAECKD LPNSGKYRLE 540
  541 DDPPGSLFCC CKK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.72
Transmembrane Helix	65	82	0.39
Non-Cytoplasmic	83	283	0.58
Transmembrane Helix	284	308	0.76
Cytoplasmic	309	337	0.48
Transmembrane Helix	338	360	0.85
Non-Cytoplasmic	361	369	0.41
Transmembrane Helix	370	394	0.83
Cytoplasmic	395	410	0.42
Transmembrane Helix	411	435	0.88
Non-Cytoplasmic	436	479	0.47
Transmembrane Helix	480	502	0.89
Cytoplasmic	503	553	0.50