YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68342007, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTQEGSQAR TPPADHPSGS GGVSVGPSFR PAVRQLPAAG GRAPGNDLLR RGSAVGGVWM  60
   61 EALAPGPALR GRRRARASGS VLSALSLAAV VLSALLRAPP AVGHLARVPR GFRLTQDTLK 120
  121 IVGSTHFPVS VYVMLHQKSP HVLCVTQRLR NTELVDPSFQ WHGPKGKLVS ENTTAQVTST 180
  181 GSLIFQSFEE TMSGVYTCFL EYKPTVEEPI KNLQLKYIVY AYREPRFYYQ FTARYHAAPC 240
  241 NSIYNISFEK KLLQILSKLV LDLSCEISLI KSECHRVKMQ RAGLQNELFF TFSVASIDTE 300
  301 KGSKPCTDHS CEASKRLSKA KNLIERFFIQ QVEVLGKRAE PLPEIYYIEG TLQMVWVNRC 360
  361 FPGYGINILK HPKCPECCVV CSPGSFNPRD GTHCLQCNNS VVYGAKTCM

Type	Start	End	Confidence
Cytoplasmic	1	78	0.88
Transmembrane Helix	79	98	0.86
Non-Cytoplasmic	99	409	0.96