YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABD12_RAT
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRTEPVTL EHERCAASGS SSSGSAAAAL DADCSLKQNL RLAGKGTAEP HSASDAGMKR  60
   61 ALGRRKSLWF RLRKILLCVL GFYIAIPFLV KLCPGIQAKL IFLNFVRVPY FIDLKKPQDQ 120
  121 GLNHTCNYYL QPEDDVTIGV WHTIPSVWWK NAQGKDQMWY EDALASNHPI ILYLHGNAGT 180
  181 RGGDHRVELY KVLSSLGYHV VTFDYRGWGD SVGTPSERGM TYDALHVFDW IKARSGDNPV 240
  241 YIWGHSLGTG VATNLVRRLC ERETPPDALI LESPFTNIRE EAKSHPFSVI YRYFPGFDWF 300
  301 FLDPITSSGI KFANDENMKH ISCPLLILHA EDDPVVPFHL GRKLYNIAAP SRSFRDFKVQ 360
  361 FIPFHSDLGY RHKYIYKSPE LPRILREFLG KSEPERQH

Type	Start	End	Confidence
Cytoplasmic	1	69	0.86
Transmembrane Helix	70	90	0.75
Non-Cytoplasmic	91	398	0.98