YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50925577, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGIRYAFR PKGAQRKEDT TPKKGIRRYL FELKEGNKQF WLSGHAVTKL ITLGCIITAL  60
   61 DYFESMLPHP VLVLVLSMEV AIYIFFIFLN TFAINRYITF IFWPMTDLLN SLFSCVFLAG 120
  121 SVFFAFKARR TLPKPYLTAM IFMGVAAISC FLDIFLQLPH FRGLQMR

Type	Start	End	Confidence
Cytoplasmic	1	40	0.80
Transmembrane Helix	41	63	0.65
Non-Cytoplasmic	64	70	0.47
Transmembrane Helix	71	94	0.84
Cytoplasmic	95	105	0.45
Transmembrane Helix	106	128	0.86
Non-Cytoplasmic	129	135	0.54
Transmembrane Helix	136	158	0.91
Cytoplasmic	159	167	0.55