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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|87199612, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.52
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPIFYDPT GRRSLLAKRS LAVVFLAVIL AALAFATTLV AVPRQRALSL PQPHFEAASL  60
   61 HRGHGLSRLR SWLPRLHLQR SQEALAIGFY QPRSDASFQS LSRHGNQLDW VVPALLNVAG 120
  121 PEHRLAVSND PRFDSFVAAG HHHYKVLPMV QNVGGDGWDG ANVARILENA TERHALERQL 180
  181 ADYVARRGDA GLVLDFEDLP ATAMRPYVAF LRETNALLPA GAQLAVTAPA GEDDWPIAAL 240
  241 GRAADKVILM AYDEHWQNGA AGPIASQTWF TNEVEKSARA LPADRLVIAL GSYGYDWHQG 300
  301 GTDALSLSDA WLAAHDSHAP IIFDKASGNA GFAYEQDGVS HTVWMLDAAT DWNEMLAVQR 360
  361 LGIGNLALWR LGTEDPGFWN DLAALRSGKA PDLSRLVSEG GNDVEGTGEI LRITATPVAG 420
  421 SRTVAFGDQH LIRDERYGDL PTPFVVRRTG AANPKLLALT FDDGPDPKWT PKVLSTLEAA 480
  481 HVPATFFVIG ENALVRPDLL RRMVADGDEI GNHTYTHPNL AGSSEAETRL EINATQRLVQ 540
  541 AYTGRSMTLF RAPYFGDAEP TTADELQPAL RAQQAGYTIV GLHVDPNDWQ NPGTDEIVRQ 600
  601 VVNQIHNATE QSSSNVILLH DGGGDRSQTV AALPRIVAVL RAEGYSFVTA SQLVGIPPQA 660
  661 AMPRLSSSDL AAVRVDVAAF LALDGLVTLF SWLFFVAIAL GIARAVIMAG LAWWQSRSPR 720
  721 AEPPAFEPTV SVIIPAWNEE RVIAASVERV LASDYPALQV IVADDGSKDA TSAVVARHFG 780
  781 HDPRVTLLTL ANGGKAAALN RALRHATGEV VIALDADTQF EPLTIRRLAR WFADPRIGAV 840
  841 AGDARVGNRV NLVTRWQAVE YITAQNLERR ALAGFDAMTV VPGAVGAWRR AALDSVGGYP 900
  901 ENTLAEDQDL TIAIQRKGWR VTYDPRAVAW TEAPQTFRAL ARQRYRWAFG TLQCLWKHRK 960
  961 VITSRKPAGL GLVGLPQAWL FQIAFAAISP LIDGALIASI ISTVVRVVQH GWAQTQGDLG1020
 1021 RMAIYWSLFT AIDVICGWIA YRLDDKRPPY PAHLLVAQRI VYRQIMYWVV LRALASAIGG1080
 1081 WIVGWGKLER TGTVSPAPER A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle