YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78195977, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTRQPRDT GLGWGVAASC VVHASVAAFV LLHHFSSPAP LEAPVYYVDV VNLPVAAPQA  60
   61 GSPVTGGSPP PAAPSPPPKP AEMALPQKRT PTKAATPKKS SSKESDAGKA FEERMDKLQR 120
  121 AIDERRQEAA LDSLRRKTAG SGRQPERVGT PGGTGKEAGS DYASYIQSRL TDAFQSTIAH 180
  181 QSKAPEVVVK LTIDAGGHIA RKRIERSSGD KIFEESVYKA IARAEKTFVP PPGGGEFDYG 240
  241 FIFRPQGVGK K

Type	Start	End	Confidence
Cytoplasmic	1	10	0.59
Transmembrane Helix	11	32	0.58
Non-Cytoplasmic	33	251	0.98