YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78224572, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFRSIRFSL TLWYAVTLAV ILVLFSSFIY LILQNQLTKE IDRELLTVAE AVASPTLEPF  60
   61 RRAGPSVFDQ VLEDFIGTRL TGKFVQVLDG GGRITASSKG AEGLRTPLGK GASRRAWAGK 120
  121 VTYETKVSLD LYPVRTITYP IMDNGRLLQI VQVGTSMRAA AETLDKVLVV FAVSIPLALI 180
  181 LWSVGGWFLA GRALKPVDFI TRSAQKITAE NLGLRLEVVN PQDEIGRLAI TFNDTLERLE 240
  241 DAFRRVKQFT GDVSHELRTP LTILRGETEV GLRWAREPEE FRELFRSNLE EINRMSKIIE 300
  301 ALLELSRAEE GGLKLERVPI ELEDLLGELV QQSRLIDPEK GLKIAFSAVT PVTVTGDWLR 360
  361 LRQVFMNLLD NAVTYTPAGG EVSVVLDASG GFARVTVIDS GVGIPADDLP HIFERFYRVD 420
  421 KARNRADGGC GLGLSLVRTI TEAHGGKIDV VSEVGKGSVF TVYLPLQGTV

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.48
Transmembrane Helix	10	33	0.90
Cytoplasmic	34	166	0.50
Transmembrane Helix	167	190	0.62
Non-Cytoplasmic	191	470	0.83