YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48846107, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDTNAKTIW NIPNILTLLR IALIPVLAVL LLSPSREAGF WAAAVFAVAS TTDWLDGYLA  60
   61 RRMGIVTVFG KFLDPIADKL MVMAALIMIL PYNRVPAWMV LVILGREIII TGLRGIASSE 120
  121 GIVISASDLG KFKTIFQMVA IIGLLLHYDY HWFFGVDNPY LIVNMHNAGM FYLWIATIMT 180
  181 VWSGADYLAK FMRVIAR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.82
Transmembrane Helix	12	32	0.89
Non-Cytoplasmic	33	37	0.76
Transmembrane Helix	38	59	0.79
Cytoplasmic	60	71	0.67
Transmembrane Helix	72	90	0.74
Non-Cytoplasmic	91	96	0.59
Transmembrane Helix	97	117	0.80
Cytoplasmic	118	133	0.74
Transmembrane Helix	134	151	0.93
Non-Cytoplasmic	152	169	0.85
Transmembrane Helix	170	189	0.93
Cytoplasmic	190	197	0.89