YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78224096, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSMLFNIA TFSYLISMLA FFTFLAVKGK SVGLVGSLAA YFGFIVHSAA ILLRWKESYD  60
   61 IGMGHAPLSN LYESVVFFAW TIILIFGIID LKYKYRVVGA FVVPFALLGM AWAQLGMDSG 120
  121 IQPLVPALQS NWLLYHVITC FLGYAAFAVA CGISIMYLIK AGKDESAGSA QSGGIIAMFP 180
  181 SIKILDDLNY KAIIIGFPLL TLGIITGAAW ANYAWGTYWS WDPKETWSLI VWFIYAAFLH 240
  241 ARFTRGWVGK KAAILSIVGF AATIFCYLGV NLFLSGLHSY GGGG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.87
Transmembrane Helix	6	26	0.92
Cytoplasmic	27	32	0.77
Transmembrane Helix	33	53	0.91
Non-Cytoplasmic	54	69	0.81
Transmembrane Helix	70	89	0.91
Cytoplasmic	90	96	0.77
Transmembrane Helix	97	116	0.94
Non-Cytoplasmic	117	132	0.91
Transmembrane Helix	133	158	0.88
Cytoplasmic	159	191	0.90
Transmembrane Helix	192	211	0.94
Non-Cytoplasmic	212	225	0.83
Transmembrane Helix	226	244	0.92
Cytoplasmic	245	252	0.85
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	284	0.84