YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_GEOMG
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPNYRIFSI VTAVSLVIDQ ATKILVDRTL ELYQSIPVVP GLFSITYMRN KGAAFSFLSN  60
   61 FDYRRPFFIA VTLVAMAAIA ITFRKLRDDQ RLAAVSLSLI FSGAVGNLID RVRLGEVIDF 120
  121 LDVYWKTHHW PAFNVADSAI CVGVALLALD MIRDERRQSK DN

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.56
Transmembrane Helix	65	83	0.93
Cytoplasmic	84	91	0.80
Transmembrane Helix	92	112	0.86
Non-Cytoplasmic	113	129	0.89
Transmembrane Helix	130	149	0.92
Cytoplasmic	150	162	0.85