YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48844174, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEMQQVWV YLSTSPLLWL TLTLIAYQIG TWVFRRLDCP PLLNPVLTAI ILLVVLLKVS  60
   61 GIDYQTYFRG AQFIHFLLGP ATVALAIPLY REMEVIRKSF IPILITLAVG SVAAIISAVG 120
  121 IVWALGGETI ILLSVAPKSV TTPIAMGISE QIGGLPSLTA VVVVLTGITG AVGGDFILNL 180
  181 LRIKDDNARG MALGVASHGI GTAHAIQKSR MAGAFSALAM ALNGLFTALL LPVLVHLMQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	34	0.77
Cytoplasmic	35	41	0.82
Transmembrane Helix	42	62	0.91
Non-Cytoplasmic	63	70	0.83
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	99	0.90
Transmembrane Helix	100	125	0.89
Non-Cytoplasmic	126	155	0.90
Transmembrane Helix	156	178	0.89
Cytoplasmic	179	189	0.78
Transmembrane Helix	190	206	0.56
Non-Cytoplasmic	207	213	0.46
Transmembrane Helix	214	237	0.89
Cytoplasmic	238	239	0.51