YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33439994
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	31	0.93
Non-Cytoplasmic	32	52	0.85
Transmembrane Helix	53	77	0.88
Cytoplasmic	78	89	0.83
Transmembrane Helix	90	110	0.90
Non-Cytoplasmic	111	133	0.83
Transmembrane Helix	134	156	0.89
Cytoplasmic	157	167	0.82
Transmembrane Helix	168	187	0.90
Non-Cytoplasmic	188	207	0.86
Transmembrane Helix	208	231	0.86
Cytoplasmic	232	246	0.90
Transmembrane Helix	247	266	0.92
Non-Cytoplasmic	267	283	0.85
Transmembrane Helix	284	303	0.95
Cytoplasmic	304	311	0.85
Transmembrane Helix	312	331	0.94
Non-Cytoplasmic	332	350	0.87
Transmembrane Helix	351	372	0.90
Cytoplasmic	373	393	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKARPLGGR LISIPVLVFA PLAAICALLI LRRLIFGIGS VTELNGGYPW GLWIGFDLLV  60
   61 GTGLACGGWA LAWTVYVFNK GKYHPLVRPA LLASLFGYTL GGLSITIDMG RYWHLPYFFM 120
  121 PGQFNTSSVL FETAACMTVY ICVVTLEFAP VILGYFGLKK WFDKLNKIMF FLVALGALLP 180
  181 MMHQSSMGSL MIVAGHKVHP VWQSYEMLPI FSLFTAFIMG FSIIIFEGSL VKAGLAGKAP 240
  241 DERHLFTRLA RVAAILIGLF IVVRFGELIY NDKLHYVLQG DFYSLMFWLE VSLMSLPIFT 300
  301 LFLGDKFSDS RWLFISALCM IGGSALWRMN YSIIMFDPGM GYDYFPSAPE LLISIGFISI 360
  361 EICAYILIVR LFPVLPVIQE AHQENNIQSG VRA