YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49333379
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.51
Transmembrane Helix	37	59	0.82
Cytoplasmic	60	85	0.42
Transmembrane Helix	86	114	0.68
Non-Cytoplasmic	115	124	0.55
Transmembrane Helix	125	147	0.84
Cytoplasmic	148	152	0.51
Transmembrane Helix	153	175	0.84
Non-Cytoplasmic	176	180	0.55
Transmembrane Helix	181	203	0.84
Cytoplasmic	204	212	0.61
Transmembrane Helix	213	235	0.84
Non-Cytoplasmic	236	278	0.65
Transmembrane Helix	279	300	0.78
Cytoplasmic	301	359	0.46
Transmembrane Helix	360	380	0.87
Non-Cytoplasmic	381	385	0.52
Transmembrane Helix	386	408	0.89
Cytoplasmic	409	417	0.57
Transmembrane Helix	418	437	0.87
Non-Cytoplasmic	438	457	0.72
Transmembrane Helix	458	481	0.78
Cytoplasmic	482	524	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPKPEEIS HPPMDQLQGL EYCIDSNPSW GEAIALGFQH YILALGTAVM IPSFLVPLMG  60
   61 GTDDDKVRVV QTLLFVEGIN TLLQTLFGTR LPTVIGGSYA FMVPIISIIH DTTLLNIEDN 120
  121 HMRFLYTMRA VQGALIVASS IQIILGYSQM WAICTRFFSP LGMIPVIALV GFGLFDKGFP 180
  181 VVGRCVEIGI PMLILFIAFS QYLKNFHTKQ LPILERFALI ISITVIWAYA HLLTASGAYK 240
  241 HRPELTQLNC RTDKANLISS APWIKIPYPL QWGAPTFDAG HAFGMMAAVL VSLIESTGSY 300
  301 KAAARLASAT PPPAHILSRG IGWQGIGILL DGLFGTLTGS TVSVENVGLL GSTRVGSRRV 360
  361 IQISAGFMIF FSILGKFGAL FASIPFTIFA AVYCVLFGIV ASVGLSFMQF TNMNSMRNLF 420
  421 IIGVALFLGL SVPEYYREYT AKALHGPAHT RAVWFNDFLN TIFFSSPTVA LIVAVLLDNT 480
  481 LDYKDSARDR GMPWWANFRT FKGDSRSEEF YSLPFNLNRF FPPS