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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|117610261, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRPLYIWVL LLVLSIPGLG ASLAHGEGLL SNDLQAYLKQ LGKIRMCVAP DWMPYEQVDA  60
   61 QGRHVGMAAD YMRLFEQRLH TPIQLVPTAS WAQSLEASRQ GLCDILSLVN ETPQRQAWLD 120
  121 FTTPYLRSPA VLVVRRDRPD RVQDIAQMRG LKLGITKGAV FAETVKPNHP EITHVSANSV 180
  181 DELLEMVSNG QLDGAVASLY VASHRIRDLG LANLIIGKVA GPPLMLRVGV RKGAPELLQA 240
  241 FQAVVDGISQ EDHIRIRTKW HPVLAGELDA WRLSLNPAQQ AYLQEKKRIS YCVDPHWYPL 300
  301 ESMDEGGFHV GMSADYMALM GQRLGVPLRL VASHSWSDSL RMVRLGQCDM LALAQETAAR 360
  361 GSFLKFTDPY FSTPVVLVTR KDAPFLAGIT DIGDKEVAIP LNFATYDLVR QDYPWIPIRD 420
  421 VATVDEGLQK VSRGDLFALI SALPVAYYSL TLGPLDNLKI SGHTDYKLKL GVGVRKQDAM 480
  481 LHEIMQLAVR SITPEEHIHI RQKWGMASLS PQTDIALLLK VGAGLLLAFV MVLIWNRKLS 540
  541 RLTKQLQLAS AEARVASETK NLFLANMSHE VRTPLNAIIG MSRLAQDLRE EHVRQDYLVK 600
  601 IHGASQSLLA IINDLLDFSK LEAGKLALER TPFQIDEVIA NINAILGHKA VQKELSIRYY 660
  661 VDADVPNHVV GDPLRLGQVL INLMGNAVKF TDQGYIALRV EQVAHSEHRL RLRFSVKDSG 720
  721 VGISPSAVAG LFQAFTQADN SITRRFGGTG LGLVISRELV KVMGGDIHVE SELGVGSRFF 780
  781 FEAEFVPIDE GLHAKTEQPW QGRGAVVVDA DRDEQNYLKH ILERCGLGCH CYSDPTLLLS 840
  841 EAFARLDPAP HYLFIRESSL SSSALEHLSH HLRHHGVVKP MKQILLCRRQ GGDERSGWHS 900
  901 PLMDKMLVEP LHAQQLRRLL AQLEGIETQE GGGLNDGVSA ARLRRIQGAR VLLVEDNALN 960
  961 QQVAVAFLEQ AGMEVAVAEN GLRCIEMAEQ SHYDLVFMDI QMPVMDGLEA TRQLRQRSAL1020
 1021 AKLPIIAMTA QAMPSERECS MVAGLDDYLT KPVSPEAIQQ MLVRWISPRH PAKVRTQMVE1080
 1081 PAVMPVKVVE PTLPFKASPG LGDTPTQRLQ EDAHEEVAAG RAEDLARFDT ITQMDVSVGL1140
 1141 SRTGNSAKLY EQLLRGFLER YLDAPLRLDA MQSKQAWAEI GDLAHAIKGV ASYMAAEALV1200
 1201 HAAQAMDQAV KQESTHRFEE IAGMLNHELK LVLADLQVWR SGQPPQQDAS Q

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Created and Maintained by: Michael Riffle