YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37702072, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLRKTHPL FKIANDALID LPTPSNISAW WNFGSLLGLC LAIQILTGLF LAMHYTPDTS  60
   61 MAFSSVAHIC RDVNYGWLIR NMHANGASFF FVCIYLHIGR GLYYGSYHYK ETWNIGVVLL 120
  121 LLTMMTAFVG YVLPWGQMSF WGATVITNLL SAIPYIGNTL VQWLWGGFSV DNATLTRFFA 180
  181 FHFLLPFIIA AMTIIHLLFL HETGSNNPIG LMPNADKISF HPYYSYKDLL GFATLLLTLM 240
  241 GLALFSPNLL GDPDNFTPAN PLVTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLASILV 300
  301 LMAVPFLNTS KHRNLTFRPF SQLLFWILVA DVIVLTWIGG MPVEDPYIII GQIASLLYFL 360
  361 LFLVLMPLSA QLENKFLKLS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.65
Transmembrane Helix	30	55	0.84
Non-Cytoplasmic	56	81	0.60
Transmembrane Helix	82	104	0.81
Cytoplasmic	105	111	0.56
Transmembrane Helix	112	135	0.87
Non-Cytoplasmic	136	177	0.35
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	228	0.51
Transmembrane Helix	229	250	0.83
Non-Cytoplasmic	251	287	0.63
Transmembrane Helix	288	309	0.88
Cytoplasmic	310	319	0.82
Transmembrane Helix	320	341	0.89
Non-Cytoplasmic	342	347	0.81
Transmembrane Helix	348	370	0.91
Cytoplasmic	371	380	0.87