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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8468012, gi|3...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPESWRDAEA NASSSASVAA ADSSPGNGKG GGGGGGAAVA RGERAASASA SARVPFHKLF  60
   61 AFADKTDAAL MALGTLGAVA NGAALPFMTV LFGNLIDAFG GAMGIHDVVN RVSMVSLEFI 120
  121 YLAIASAVAS FVQVTCWMIT GERQAARIRN LYLKTILRQE IAFFDKYTNT GEVVGRMSGD 180
  181 TVLIQDAMGE KVGKFIQLVV TFLGGFIVAF AQGWLLTLVM MATIPPLVVA GAVMSNVVAK 240
  241 MASLGQAAYA ESSVVVEQTI GSIRTVASFT GEKQAVEKYN KSLKSAYKSG VREGLAAGLG 300
  301 MGTVMVLLFC GYSLGIWYGA KLILLKGYTG AKVMNVIFAV LTGSLALGQA SPSMKAFAGG 360
  361 QAAAYKMFET INRKPEIDAY STTGMKPDDI RGDIEFRDVY FSYPTRPDEQ IFRGFSLSIP 420
  421 SGTTVALVGQ SGSGKSTVIS LIERFYDPQL GDVLIDGVNL KEFQLRWIRS KIGLVSQEPV 480
  481 LFAASIKENI AYGKDNATDQ EIRAAAELAN ASKFIDKMPQ GLDTSVGEHG TQLSGGQKQR 540
  541 IAIARAILKD PRILLLDEAT SALDAESERI VQEALDRVMT NRTTVIVAHR LSTVRNADTI 600
  601 AVIHQGTLVE KGPHHELLKD PEGAYSQLIK LQEANRQDKS DRKGDSGARS GKQLSINQSA 660
  661 SRSRRSSRDN SHHSFSVPFG MPLGIDIQDG SSDNLCDGMP QDVPLSRLAS LNKPEIPVLI 720
  721 LGSIASVISG VIFPIFAILL SNVIKAFYEP PHLLRKDSQF WSSMFLVFGA VYFLSLPVSS 780
  781 YLFSIAGCRL IKRIRLMTFE KVVNMEIEWF DHPENSSGAI GARLSADAAK VRGLVGDALQ 840
  841 LVVQNTTTLI AGLVIAFVSN WELSLIILAL IPLIGLNGWI QMKFIQGFSA DAKMMYEEAS 900
  901 QVANDAVSSI RTVVSFSAEE KVMDLYKKKC EGPLRTGIRT GIISGIGFGV SFFLLFGVYA 960
  961 ASFYAGARLV EENKTTFPKV FRVFLALAMA AIGVSQSSTL TSDSSKAKSA VSSIFAIVDR1020
 1021 KSRIDPSEDA GVTVETLHGN IEFQHVSFRY PTRPDVEIFR DLCLTIHSGK TVALVGESGS1080
 1081 GKSTAISLLQ RFYDPDVGHI LLDGVDIQKF QLKWLRQQMG LVSQEPALFN DTVRANIAYG1140
 1141 KEGEATESEI IEAAKLANAH KFISSSHQGY GTTVGERGAQ LSGGQKQRIA IARAIVKDPK1200
 1201 ILLLDEATSA LDAESERVVQ DALDRVMVNR TTVIVAHRLS TIQNADLIAV VKNGVIIEKG1260
 1261 KHDTLMNIKD GAYASLVALH SAASS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle