YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68194964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNKLIFGRY MPGDSLIHRL DPRAKLLASF YFIGIIFLAN NWETYLLLAF FTLLSVFLSK  60
   61 VDLKFFIRGI RPLIWLILFT VALQVLFTSG GETYWSWGVF HITEFGVMNG LFIFCRFVLI 120
  121 IFMSTLLTLT TPPLELSDAI EYLLRPLKAV RFPVHEISLM LSIALRFVPT LMDETEKIMN 180
  181 AQRARGVDFG EGNLVQKMKA VIPLLIPLFV SSFNRAEDLA TAMEARGYKG GEGRTKYRVL 240
  241 HWHNRDTMVI IAFVLLTVLL IFLRG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	44	0.79
Transmembrane Helix	45	63	0.91
Cytoplasmic	64	72	0.78
Transmembrane Helix	73	91	0.94
Non-Cytoplasmic	92	106	0.71
Transmembrane Helix	107	129	0.81
Cytoplasmic	130	241	0.84
Transmembrane Helix	242	263	0.88
Non-Cytoplasmic	264	265	0.75