YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48823768
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.98
Transmembrane Helix	56	77	0.92
Non-Cytoplasmic	78	82	0.91
Transmembrane Helix	83	102	0.93
Cytoplasmic	103	250	0.98
Transmembrane Helix	251	269	0.92
Non-Cytoplasmic	270	280	0.81
Transmembrane Helix	281	304	0.89
Cytoplasmic	305	668	0.99
Transmembrane Helix	669	689	0.94
Non-Cytoplasmic	690	695	0.71
Transmembrane Helix	696	716	0.90
Cytoplasmic	717	740	0.92
Transmembrane Helix	741	763	0.86
Non-Cytoplasmic	764	777	0.90
Transmembrane Helix	778	799	0.90
Cytoplasmic	800	814	0.90
Transmembrane Helix	815	835	0.91
Non-Cytoplasmic	836	844	0.73
Transmembrane Helix	845	864	0.89
Cytoplasmic	865	879	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYKQTIEE VKKVTEADPD TGLSSQEVDE RRKKQGLNKF DEAPKESMIK KFFRSLSDFT  60
   61 TIILLVAAVI SFYTAFATEH GDLFEGLLII AIVVINSVLA IVQEGNAEKA LESLQDMNKQ 120
  121 TATVIRDGKV TTVESEQLVV GDILVLESGD AISADARLIE ASQLRVEESA LTGESEAVEK 180
  181 DAAFIAEEDE SLGDQLNMVF KGCTVAAGRG KAIVTAIGMA TEMGKIADLL NENTMQKTPL 240
  241 QVRLNQLGKR ISMIALAAAA LVFVIGELQG EPLLEMFMTS ISLAVAAVPE TLTVIVTLTL 300
  301 AYGVQKMARK HAIIRQLPAV ETLGTANVIC SDKTGTLTQN EMRVRRVWSK EDEVTNIEDS 360
  361 MTNSAMEILK MAALCTDVTV EQEDDDLVIK GNPTEVAIVR AVEENYHTKA ELEEKYPRVN 420
  421 ELPFDSERKM MTTVHQMGEK YISITKGAFD VLAPRFSSGD VEQAAIVNDR FGKRALRVIA 480
  481 VGYATYDEEP QDISSEALEK DLRLIGLIGM IDPPRPESKG AIKRAKKAGI KTVMITGDHV 540
  541 VTASAIAKEL GILNDPSEAL SGSELHQLSD EELDARVKAL SVYARVTPED KIRIVKSWQR 600
  601 TGAVVAMTGD GVNDAPALKA SNVGCAMGIT GTDVAQSAAD MILTDDNFAT IVDAVSQGRS 660
  661 VYQNIRKAIN FLLSCNISEI FIVLIAMLLG WGAPFTAVQL LFVNVVADGL PGFALGREPA 720
  721 EHGIMDQPPI PKNEGIFARG LLQKIAINAG VFTIVTLFGY YLGSYVDTIS PWVDASQHVG 780
  781 QTVAFLILAY SSILHVFNVR SSQSIFKVNL ATNKALVEMA LLALAITTAV ALLPFTQELF 840
  841 GLVHISLNHW FLVGILSIVP IAVNELIKFH RLPEAEEEE