YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50878447, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSPLGSGCA FAAAASSAFP PATVPGGIFA GRRRRRPARL VLAWASSDGS DGGGAAAGAV  60
   61 AAEASAVGES KEGEVASGGG SSAESSAEKK PAPVDPKIEK ELKKAVQKTA ATFAPRASTA 120
  121 TKNPAVPGTA LYTIFEVQGY ASMLLGGALS FNLVFPSNEP DIWRLMGMWS IWMFTIPSLR 180
  181 ARDCSSKEKE ALNYLFLLVP LINVIIPFFV KSFAVVWSAD TVAFFVMYAW KLGWLQRSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.74
Transmembrane Helix	8	30	0.73
Cytoplasmic	31	130	0.76
Transmembrane Helix	131	151	0.64
Non-Cytoplasmic	152	161	0.73
Transmembrane Helix	162	181	0.86
Cytoplasmic	182	190	0.91
Transmembrane Helix	191	210	0.91
Non-Cytoplasmic	211	215	0.68
Transmembrane Helix	216	234	0.84
Cytoplasmic	235	239	0.78