YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91780041, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLTQQLTQ YAAYHRDRRN IATHFIGIPM IVLALAALLS RPAFAVGALP VMLSPAWVLF  60
   61 VAATLYYLVL DVSLGVMMAF VSALCVAFGQ WTAAQSTLAW LVIGVGLFVV GWVFQFVGHV 120
  121 AYEHRKPAFV DDVIGLLIGP LFVLAEALFG FGWRPALREA IEEQVGPTRI NADRTAAHH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	55	0.53
Transmembrane Helix	56	89	0.77
Cytoplasmic	90	96	0.45
Transmembrane Helix	97	119	0.88
Non-Cytoplasmic	120	132	0.46
Transmembrane Helix	133	153	0.89
Cytoplasmic	154	179	0.54