YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37813574
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRVQ QLGLLEEDPT TSGIRLFPRD FQFQQIHGHK SSTGCLGHGA LVLQLLSFML  60
   61 LAGVLVAILV QVSKVPSSLS QEQSEQDAIY QNLTQLKAAV GELSEKSKLQ EIYQELTQLK 120
  121 AAVGELPEKS KLQEIYQELT RLKAAVGELP EKSKLQEIYQ ELTRLKAAVG ELPEKSKLQE 180
  181 IYQELTQLKA AVGELPDQSK QQQIYQELTD LKTAFERLCR HCPKDWTFFQ GNCYFMSNSQ 240
  241 RNWHNSVTAC QEVRAQLVVI KTAEEQNFLQ LQTSRSNRFS WMGLSDLNQE GTWQWVDGSP 300
  301 LSPSFQRYWN SGEPNNSGNE DCAEFSGSGW NDNRCDVDNY WICKKPAACF RDE

Type	Start	End	Confidence
Cytoplasmic	1	49	0.93
Transmembrane Helix	50	70	0.94
Non-Cytoplasmic	71	353	0.97