YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68531220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRTLVLSV LIVASCGLGY ELIAGALSSY LLGDSILQFS SIIGCYLFAM GVGSWLSRYV  60
   61 KDEDVLTRFI DIEILVGLLG GISAALLFVV FAWLSAPFRT ALYALVFVIG MLVGMEIPLV 120
  121 MRILNARRAQ FSDLVSRVLT FDYLGALAVS LVFPLVLAPR LGLSRTGFLF GMLNVAVALF 180
  181 TLRIFRDEVS RTTLRTLRAG MVLAVLTVGF AGSNYLTHWA ERGLFGDEII HSETTPYQRL 240
  241 VITRWKDDLR LYINGNLQFS SRDEHRYHEA LVHPVLQALP WARRVLVIGG GDGLALREIL 300
  301 KYRNIEHVTL VDLDPAMTTL FSRSEPLRAL NHGSLTDQRV TVVNADAAQW LEQNQDSFDA 360
  361 IIVDLPDPSN FGLGKLYSVP MYRLMSRHLA EKGYAVVQST SPYYAPRSFW DIDATLREAG 420
  421 LHTWPYHTYV PSFGEWGYIL VGKRNDYTPP TRYDVPMKFL DGDTTALMFR FPADMAPRQG 480
  481 EPNRLNEQTL VHDFERDWRN VIR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	28	0.91
Non-Cytoplasmic	29	35	0.79
Transmembrane Helix	36	57	0.92
Cytoplasmic	58	73	0.83
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	100	0.81
Transmembrane Helix	101	121	0.94
Cytoplasmic	122	137	0.83
Transmembrane Helix	138	158	0.92
Non-Cytoplasmic	159	165	0.76
Transmembrane Helix	166	185	0.94
Cytoplasmic	186	195	0.91
Transmembrane Helix	196	219	0.85
Non-Cytoplasmic	220	503	0.96