YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68531595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPDDPERQT TLTHRERAIR AFWVTCGTLS LALGVIGIFL PVLPTTPFVL LAAACFARGS  60
   61 ERFHRWLLAH HRFGPLVHDW QTHRSIPFRA KCLALSMMWP SMIITAWLMR ERPVASITLI 120
  121 AIALGTTVWM VRLPTRPRGG HVRSSNAQPE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	47	0.63
Transmembrane Helix	48	66	0.78
Cytoplasmic	67	86	0.84
Transmembrane Helix	87	108	0.85
Non-Cytoplasmic	109	113	0.78
Transmembrane Helix	114	133	0.94
Cytoplasmic	134	150	0.89