YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94314734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.43
Transmembrane Helix	41	62	0.71
Cytoplasmic	63	70	0.58
Transmembrane Helix	71	93	0.88
Non-Cytoplasmic	94	120	0.61
Transmembrane Helix	121	139	0.96
Cytoplasmic	140	151	0.81
Transmembrane Helix	152	175	0.84
Non-Cytoplasmic	176	188	0.77
Transmembrane Helix	189	207	0.93
Cytoplasmic	208	215	0.74
Transmembrane Helix	216	237	0.92
Non-Cytoplasmic	238	253	0.86
Transmembrane Helix	254	277	0.80
Cytoplasmic	278	302	0.80
Transmembrane Helix	303	325	0.61
Non-Cytoplasmic	326	336	0.49
Transmembrane Helix	337	357	0.86
Cytoplasmic	358	360	0.45
Transmembrane Helix	361	382	0.55
Non-Cytoplasmic	383	401	0.76
Transmembrane Helix	402	422	0.88
Cytoplasmic	423	431	0.75
Transmembrane Helix	432	450	0.92
Non-Cytoplasmic	451	453	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSDQRPRP GSESTLAQPS TGVLERLFKL GEHKTDARTE ILAGVTTFLT MAYIIFVNPS  60
   61 ILGDAGVPKD AVFVATCLAA AIGTLIMGFY ANYPIAMAPG MGLNAYFAYT VVKGMGLPWE 120
  121 AALGAVFISG CLFLLVTLFR VREMIVNGIP HALRVAITAG IGLFLAIVAL KNAGIITASP 180
  181 ATLVTIGDLH QTSAILAVIG FFAIVALDHL KVKGAILIGI LGTTILSFVF GGNTFHGVFS 240
  241 APPSIAPTLF KLDISAALSI GIVNVVLVFF LVELFDATGT LMGVANRAGL LKAGRMDRLN 300
  301 KALMADSTAI MAGSLLGTSS TTAYIESASG VQAGGRTGLT AVTVAVLFLA CLFIAPLAGT 360
  361 VPAYATAPAL LYVSCLMLRE LVDVDWSDAT EVVPAVLTAL GMPFTYSVAN GVAFGFIAYA 420
  421 GLKLLTGRAR EVPVMAWVIA AVFLFKFYYL PGH