YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASI3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNILQHVK QLLHNRDVFS FFHNKTGNLN YLDNTTQKPE VFVSPNSTIV SAPTLDSFQA  60
   61 LMEKGNFTTL QLAKVGIRMF FSYSVSKYAV LCFSTAIILN RLTVMSSLRS NSTNIRLPLW 120
  121 SKTLLHLVAT LSLVKALLQI LSQFGLMHEL HVSDTDFYAL SVYLFVALSD CIEIFISSTT 180
  181 NVPSLICSDF SIWGLSLNLY IISKMPAGQQ HIGDNVELLG AVFHRLVIHL VELFHIRAYR 240
  241 LCGEVILNAG FFTAFVTRTY LNGLDFINIC LIHNYFPGFF YISTILLASI GIFLKALFTS 300
  301 NPFRSLYSRY KNLEKWWRSN NYNGEEEFNE IALSLCLLLT SNDYKIFKKS DNVKSVDEVA 360
  361 AFSNSYVVSG HLNQLQSTPE DLLSRKEMTT DSQLPGFART YLGLFELVRT IILTYSRLLK 420
  421 NLLWSKNFES SIDKKPRVGK RKKRDLNKYV TEKNYKKFLY KPDVKELNIE SDLRSLELLL 480
  481 PEDDSSKDYF PPRKIDESVS DEEFDSDMES QLIIDEEKEL THLSSNAVDS DDLEEIAWNI 540
  541 SMWSILNYEM DVHNKVNGPL TRSQYGKRNP QGVLVDVVIE RLLHHTNSRY MYKRLNMKDD 600
  601 DKLEFKFDFA FDSCDEVEEM DLSCLICKVN KRNIVTWPCR CLALCDDCRI SLGYKGFATC 660
  661 VSCDSEVKGY SKLNIV

Type	Start	End	Confidence
Cytoplasmic	1	83	0.58
Transmembrane Helix	84	104	0.70
Non-Cytoplasmic	105	122	0.35
Transmembrane Helix	123	146	0.77
Cytoplasmic	147	156	0.35
Transmembrane Helix	157	177	0.65
Non-Cytoplasmic	178	181	0.34
Transmembrane Helix	182	202	0.55
Cytoplasmic	203	237	0.59
Transmembrane Helix	238	261	0.66
Non-Cytoplasmic	262	276	0.54
Transmembrane Helix	277	299	0.89
Cytoplasmic	300	676	0.52