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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCS1_ORYSJ
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPTCYLLL NPTASRSHHR PRLPLPAAAP PRRRVHVSCD ARRTGGGGGG GGVKREAIPA  60
   61 GTGKAKKQVV FFDAAPPVSQ RGGGGGGEGE GEGEGEGKVA RRKENAALGL VRRLTKRTLS 120
  121 LLSNLPLAIS EMFAIAALMA LGTVIDQGEA PSYYFEKFPE DNPVFGFITW RWILTPGFDH 180
  181 MFSSPVFLGL LALLAASLMA CTYTTQIPIV KVARRWSFMH SAGSIRKQEF AESLPRASIQ 240
  241 DLGVILMGYG YEVFTKGPSL YAFKGLAGRF APIGVHIAMI FIMAGATLSA TGSFKGSVDV 300
  301 PQGLNFVIGD VMKPKGVLSF VPDVFNTEVH VNRFYMEYYD SGEVSQFYSD LSLFDLDGKE 360
  361 VMRKTIKVND PLRYGGVTIY QTDWGFSALQ VKKNGEGPFN LAMAPLKLNG DKKLFGTLLP 420
  421 LENSGSSNVK GISMLARDLQ SIVLYDQEGK FVGVRRPSSK LPIEIDGNEI VIEDAIGSTG 480
  481 LDLKTDPGIP IVYAGFGALM LTTCISYLSH SQIWALQDGS TVVIGGKTNR AKLEFSEEMN 540
  541 RLLDKVPELI SVNEKKIDSK QSAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle