YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_PSEPF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	46	0.87
Non-Cytoplasmic	47	51	0.71
Transmembrane Helix	52	76	0.75
Cytoplasmic	77	101	0.73
Transmembrane Helix	102	118	0.85
Non-Cytoplasmic	119	121	0.36
Transmembrane Helix	122	140	0.67
Cytoplasmic	141	144	0.51
Transmembrane Helix	145	166	0.76
Non-Cytoplasmic	167	172	0.56
Transmembrane Helix	173	193	0.76
Cytoplasmic	194	215	0.74
Transmembrane Helix	216	236	0.77
Non-Cytoplasmic	237	242	0.79
Transmembrane Helix	243	262	0.95
Cytoplasmic	263	274	0.87
Transmembrane Helix	275	295	0.91
Non-Cytoplasmic	296	296	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQSLLKSLN RLNPRAWDFI QLTRMDKPIG IYLLLWPTLW ALWIAGKGSP SLANIVIFVL  60
   61 GVVLTRAGGC VINDWADRKV DGHVKRTAQR PIAAGKISSK EALVFFALLM GVSFLLVLCT 120
  121 NAATIWLSLG GLALAFTYPF MKRYTYYPQV VLGAAFSWGM PMAFTAETGE LPATAWLLWI 180
  181 ANLLWTVGYD TYYAMTDRDD DLKIGVKSTA ILFGDADRVI ILTLQVLSLG CLVLAGSKFE 240
  241 LGMWFHLGLL VAAGCYAWEF WYTRDRDRMR CFRAFLHNHW AGLAIFVGIV LDYALR