YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77457806, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWTWFHKLG SPKWFYGISS KFLPWLSIAA LLLICVGVIW GLAFAPPDYQ QGNSFRIIYI  60
   61 HVPAAMLAQS IYVMLAVCGV VGLVWKMKLA DVALQCAAPI GAWMTAVALV TGAIWGKPTW 120
  121 GSWWVWDARL TSMLILLFLY FGVIALGNAI SNRDSAAKAC AVLAIVGVIN IPIIKYSVEW 180
  181 WNTLHQGATF TLTEKPAMPV EMWLPLLLTV LGFYCFFGAV LLLRMRLEVL KREARASWVK 240
  241 EEVQNSLEAA R

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	44	0.94
Non-Cytoplasmic	45	63	0.86
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	92	0.88
Transmembrane Helix	93	115	0.90
Non-Cytoplasmic	116	127	0.83
Transmembrane Helix	128	150	0.87
Cytoplasmic	151	158	0.75
Transmembrane Helix	159	178	0.91
Non-Cytoplasmic	179	202	0.95
Transmembrane Helix	203	225	0.90
Cytoplasmic	226	251	0.98