YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47552644, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVGKIHTRK LFICFCLAVV LFVPIHTFAD EKREWRDEVI YSVMIDRFNN GEPKNDKQLE  60
   61 VGNLEGYQGG DIRGIIKRMD YIKEMGFTTV MLSPLFESVK YDGLDVRNFQ KVNEHFGTEN 120
  121 DVKELVQAAH AKGIKVVFQF PLAENEQQVI DSMKWWIKEV DLDASYVMHS EQKAPAFWDD 180
  181 VQKDMQVIKK DFRVMTKEDS EYNEKIVESF SKADVSVKSL YDVSKKDEEF VTFLDNQDTK 240
  241 RFARIAKENM YYPPSRLKLA LTYLLTSPGI PNFYYGTEIA LDGGDTPENR RLMDFKSDEK 300
  301 FMQHITKLGE LRQTRPSLRR GTFELLYDKN GMSVLKRKYK DEVTLVAINN TKETQKVPLN 360
  361 ANLIGEKKEL RGLLEDEIIR EENGKFYLVL KREESNVYKV NGETGVNWLF ISLIVGVNVL 420
  421 FIVFLIAAKK RRK

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	404	0.99
Transmembrane Helix	405	428	0.89
Cytoplasmic	429	433	0.97