YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47552926, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLKLERFR KIIGIFLLVS LVFIGCFKPL RTFISSPKQL VVFEGQQSEI ASLPVFKAAS  60
   61 TDRHVFTVSS NEQKQGLMVN SHQNGEADMV FQLAGFPVKK VNVKVLKDFK VIPGGQSIGV 120
  121 KLNTKGVLVV GHHLIQTEKG KVSPGETAGV QIGDMITEIN GKTIERMSDV APFIHSSGET 180
  181 GEPLNLVLLR DGKHIRTKLT PQKDSGESSY RIGLYIRDSA AGIGTMTFIH PDSMKYGALG 240
  241 HVISDNDTKK PIQVEDGQIM RSTVTSIERG SHGNPGEKLA RFSPDREVIG NITINSPFGI 300
  301 FGKLNTNMTN GVMDKAMPIA LSHQVKEGPA KILTVIDQDK VESFDIEVVS TVPQKFPATK 360
  361 GMVIKVTDKR LLAKTGGIVQ GMSGSPIVQN GKVIGAVTHV FVNDPTSGYG VHIEWMLHEA 420
  421 GINIYDQERK AS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	30	0.84
Non-Cytoplasmic	31	432	0.99